[theano-users] ImportError: ('The following error happened while compiling the node' .so: file too short)

[Chankey Pathak]

Getting below error while running the example code of nn-semparse
<https://github.com/arunchaganty/nn-semparse>. It looks like it's an issue
with Theano. Can someone help me figure this out please.

(py27) ➜ nn-semparse git:(master) python src/py/main.py -d 100 -i 50 -o 50
-t 20 -p attention -c lstm -m attention -u 1 --train-data data/geo880/
processed-lesscopy/geo880_train600.tsv --dev-frac 0.2 --save-file params >
out_file
Split dataset into 480 train, 120 dev examples
Initializing parameters...
Traceback (most recent call last):
File "src/py/main.py", line 769, in <module>
main()
File "src/py/main.py", line 766, in main
run()
File "src/py/main.py", line 712, in run
model = get_model(spec)
File "src/py/main.py", line 232, in get_model
model = constructor(spec)
File "/home/chankey/Desktop/projects/nn-semparse/src/py/neural.py", line
56, in __init__
self.setup()
File "/home/chankey/Desktop/projects/nn-semparse/src/py/attention.py",
line 22, in setup
self.setup_encoder()
File "/home/chankey/Desktop/projects/nn-semparse/src/py/attention.py",
line 60, in setup_encoder
inputs=[x], outputs=[dec_init_state, annotations])
File
"/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/compile/function.py"
, line 317, in function
output_keys=output_keys)
File
"/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/compile/pfunc.py"
, line 486, in pfunc
output_keys=output_keys)
File
"/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/compile/function_module.py"
, line 1841, in orig_function
fn = m.create(defaults)
File
"/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/compile/function_module.py"
, line 1715, in create
input_storage=input_storage_lists, storage_map=storage_map)
File
"/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/gof/link.py"
, line 699, in make_thunk
storage_map=storage_map)[:3]
File
"/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/gof/vm.py"
, line 1091, in make_all
impl=impl))
File
"/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/gof/op.py"
, line 955, in make_thunk
no_recycling)
File
"/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/gof/op.py"
, line 858, in make_c_thunk
output_storage=node_output_storage)
File
"/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/gof/cc.py"
, line 1217, in make_thunk
keep_lock=keep_lock)
File
"/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/gof/cc.py"
, line 1157, in __compile__
keep_lock=keep_lock)
File
"/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/gof/cc.py"
, line 1620, in cthunk_factory
key=key, lnk=self, keep_lock=keep_lock)
File
"/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/gof/cmodule.py"
, line 1140, in module_from_key
module = self._get_from_key(key)
File
"/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/gof/cmodule.py"
, line 1039, in _get_from_key
return self._get_module(name)
File
"/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/gof/cmodule.py"
, line 712, in _get_module
self.module_from_name[name] = dlimport(name)
File
"/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/gof/cmodule.py"
, line 309, in dlimport
rval = __import__(module_name, {}, {}, [module_name])
ImportError: ('The following error happened while compiling the node',
Elemwise{sub,no_inplace}(TensorConstant{-1}, Shape_i{0}.0), '\n', '/home/chankey/.theano/compiledir_Linux-4.15--generic-x86_64-with-debian-buster-sid-x86_64-2.7.15-64/tmpteT4BD/ebd15923a8ccd2743164b0ff9703cac30cf1c0b3087be54016ea3a70fb272efd.so:
file too short')

[Arnaud Bergeron]

Try to clear the Theano cache (theano-cache purge) and run the code again.

Getting below error while running the example code of nn-semparse <https://github.com/arunchaganty/nn-semparse>. It looks like it's an issue with Theano. Can someone help me figure this out please.
(py27) ➜ nn-semparse git:(master) python src/py/main.py -d 100 -i 50 -o 50 -t 20 -p attention -c lstm -m attention -u 1 --train-data data/geo880/processed-lesscopy/geo880_train600.tsv --dev-frac 0.2 --save-file params > out_file
Split dataset into 480 train, 120 dev examples
Initializing parameters...
File "src/py/main.py", line 769, in <module>
main()
File "src/py/main.py", line 766, in main
run()
File "src/py/main.py", line 712, in run
model = get_model(spec)
File "src/py/main.py", line 232, in get_model
model = constructor(spec)
File "/home/chankey/Desktop/projects/nn-semparse/src/py/neural.py", line 56, in __init__
self.setup()
File "/home/chankey/Desktop/projects/nn-semparse/src/py/attention.py", line 22, in setup
self.setup_encoder()
File "/home/chankey/Desktop/projects/nn-semparse/src/py/attention.py", line 60, in setup_encoder
inputs=[x], outputs=[dec_init_state, annotations])
File "/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/compile/function.py", line 317, in function
output_keys=output_keys)
File "/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/compile/pfunc.py", line 486, in pfunc
output_keys=output_keys)
File "/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/compile/function_module.py", line 1841, in orig_function
fn = m.create(defaults)
File "/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/compile/function_module.py", line 1715, in create
input_storage=input_storage_lists, storage_map=storage_map)
File "/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/gof/link.py", line 699, in make_thunk
storage_map=storage_map)[:3]
File "/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/gof/vm.py", line 1091, in make_all
impl=impl))
File "/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/gof/op.py", line 955, in make_thunk
no_recycling)
File "/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/gof/op.py", line 858, in make_c_thunk
output_storage=node_output_storage)
File "/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/gof/cc.py", line 1217, in make_thunk
keep_lock=keep_lock)
File "/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/gof/cc.py", line 1157, in __compile__
keep_lock=keep_lock)
File "/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/gof/cc.py", line 1620, in cthunk_factory
key=key, lnk=self, keep_lock=keep_lock)
File "/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/gof/cmodule.py", line 1140, in module_from_key
module = self._get_from_key(key)
File "/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/gof/cmodule.py", line 1039, in _get_from_key
return self._get_module(name)
File "/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/gof/cmodule.py", line 712, in _get_module
self.module_from_name[name] = dlimport(name)
File "/home/chankey/anaconda3/envs/py27/lib/python2.7/site-packages/theano/gof/cmodule.py", line 309, in dlimport
rval = __import__(module_name, {}, {}, [module_name])
ImportError: ('The following error happened while compiling the node', Elemwise{sub,no_inplace}(TensorConstant{-1}, Shape_i{0}.0), '\n', '/home/chankey/.theano/compiledir_Linux-4.15--generic-x86_64-with-debian-buster-sid-x86_64-2.7.15-64/tmpteT4BD/ebd15923a8ccd2743164b0ff9703cac30cf1c0b3087be54016ea3a70fb272efd.so: file too short')
--
---
You received this message because you are subscribed to the Google Groups "theano-users" group.
For more options, visit https://groups.google.com/d/optout <https://groups.google.com/d/optout>.